PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100105480151
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family AP2
Protein Properties Length: 448aa    MW: 50451.2 Da    PI: 6.0882
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100105480151genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.43.1e-17123172155
                           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                   s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Ote100105480151|100105480151 123 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 172
                                   78*******************......55************************998 PP

2AP228.53.9e-09215254144
                           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAak 44 
                                   s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+
  Ote100105480151|100105480151 215 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEIEAAR 254
                                   89********.7******5553..2.26**********99**98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.84E-16123181IPR016177DNA-binding domain
PfamPF008472.0E-9123172IPR001471AP2/ERF domain
SMARTSM003805.1E-32124186IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.8E-17124180IPR001471AP2/ERF domain
CDDcd000181.79E-11124182No hitNo description
PROSITE profilePS5103217.82124180IPR001471AP2/ERF domain
CDDcd000182.06E-22215284No hitNo description
SuperFamilySSF541712.88E-12215283IPR016177DNA-binding domain
PfamPF008474.6E-5215254IPR001471AP2/ERF domain
SMARTSM003801.0E-25216288IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-10216282IPR001471AP2/ERF domain
PROSITE profilePS5103210.178216282IPR001471AP2/ERF domain
PRINTSPR003674.1E-6217228IPR001471AP2/ERF domain
PRINTSPR003674.1E-6264284IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MLDLNLAINP SVPTTDRAET ASSSSAIYVE TSSTAVDENS CSDHLIDFDI RKDNGEYEES  60
EKLSCDYVMK EFFSGDQSGR PMQWLDLSEN HHELMEHTII TKEHQQKRQL MKKSRRGPRS  120
RSSQYRGVTF YRRTGRWESH IWDCGKQVYL GGFDTAHAAA RAYDRAAIKF RGLDADINFN  180
VNDYDEDFMQ MKNLTKEEFV HILRRQSTGF SRGSSKYRGV TLHKCGRWEA RMGQFLGKKY  240
IYLGLFDSEI EAARSTLTDD ILWAYDKAAI KCNGKEAVTN FEPSTYEEEL NSEVAIGGWF  300
TCFLLSVIPP DGEKSNLNLS LSIAPPEGAP CEIHNMEICP ASASVAAQLS KTHGNVCEYP  360
FIWRGVNSCL SPLYEGTTIE KVVELDSSAN WSRNSRIDVH GDHSSPIFST AASSGFATSS  420
ATIHRLPFST RSPHHYLPPS NNESNYCL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011077383.11e-172PREDICTED: floral homeotic protein APETALA 2-like
TrEMBLA0A0G2SJN90.0A0A0G2SJN9_SALMI; AP4/EREBP Transcription Factors
STRINGPGSC0003DMT4000717321e-129(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59124116